PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G26580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 364aa    MW: 39678.8 Da    PI: 5.7991
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G26580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.8e-12181238156
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                      s ++GV++++++g+++A+++d  +   g +rk  + g+++t+e+Aa+a++ a++k++ge
  LPERR02G26580.1 181 SSFHGVTRHRWSGKFEAHLWDsSCRmEGrRRKGKQ-GSYDTEEKAARAYDVAALKYWGE 238
                      5799*****************77667776667777.********************997 PP

2AP249.31.2e-15280331155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  LPERR02G26580.1 280 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 331
                      57****************9995.....234************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-17181247No hitNo description
SuperFamilySSF541711.44E-14181247IPR016177DNA-binding domain
PROSITE profilePS5103217.596182245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-13182246IPR001471AP2/ERF domain
PfamPF008475.5E-9182238IPR001471AP2/ERF domain
SMARTSM003803.7E-21182251IPR001471AP2/ERF domain
PRINTSPR003671.4E-5183194IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17280341IPR016177DNA-binding domain
PfamPF008471.7E-9280331IPR001471AP2/ERF domain
CDDcd000182.64E-23280339No hitNo description
Gene3DG3DSA:3.30.730.103.8E-19281340IPR001471AP2/ERF domain
PROSITE profilePS5103218.571281339IPR001471AP2/ERF domain
SMARTSM003801.0E-27281345IPR001471AP2/ERF domain
PRINTSPR003671.4E-5321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEGSLEEGKA SGEPGEDEKT QSSPPINLNS LPATASAAAA APEEGGLHSA VESAAKDSTT  60
TKGVESVGTV HKKIPKNEVV DEDDVQTCIN EKKDSVILSN SKKPVDEKDA SANVAEDGQS  120
VDCSTEDQRA KFVTVVKKDE SVDDVSDSVN PVTVVGFRNE KGGTSATAGT SSVRPAGTRS  180
SSFHGVTRHR WSGKFEAHLW DSSCRMEGRR RKGKQGSYDT EEKAARAYDV AALKYWGENT  240
KLNFSVSEYE KELEDIRDMS REECITYLRR RSSCFSRGAS IYRGVTRRQK DGRWQARIGL  300
VAGTRDIYLG TFKTEEEAAE AYDIAAIEIR GKNAVTNFDR SNYIEKGMHC IEGAGLKLLA  360
SKPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214GRRRKGKQ
2268289RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851140.0AY685114.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D8 (AP2D8) mRNA, complete cds.
GenBankFJ9402200.0FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689372.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_006647887.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 isoform X1
TrEMBLA0A0D9VL090.0A0A0D9VL09_9ORYZ; Uncharacterized protein
STRINGOB02G39430.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.15e-69AP2 family protein